I agree with the above post. The scratches are usually cosmetic and most used aquariums are going to have a few.
I've dealt with some used aquariums, recently just got done leak-testing a 90 gallon.
My recommendation would be to put the tank in your garage or other flat surface (make sure that it's a level surface). Fill your tank to the top of the plastic molding, and let it sit for three days. While it's full, carefully inspect all corners and surfaces of the tank. Look for any signs of stress fractures in the glass (these are much more noticeable than scratches. Check the plastic molding and cross brace. Make sure that your cross brace, located in the middle, is totally intact. If your cross brace is cracked, I wouldn't use the tank until the cross brace has been repaired. Cracks that are in the plastic molding that go around your tank are cosmetic. Just make sure that the plastic molding is still seated down well on your glass.
Good luck with your aquarium. Pictures would help tremendously here if you can provide them.
One note: I am curious to know what kind of silicone you used to re-seal your tank. If you used aquarium sealent then your good to go. I have used type 1 GE silicone sealent. Just make sure that you did not use any silicone type 2 sealents. Type 2 silicone contains mildew inhibitors that are not safe for your fish. (It's too bad that aquarium sealent is three times the price)
Cheers and good luck!