That's okay...now you know! The fish will find spots to rest in, so don't worry about that.
Better that you asked about it now, rather than after your fish died from some "inexplicable" reason.
They may survive for a little while without filtration at night, however it definitely isn't good for them, and you'd likely lose them pre-maturely in the long-run.
Don't feel bad...you're fixing the problem now, and that's what counts.
I've often checked on fish at night too, because I was curious about their 'sleeping habits.' Surprisingly, some were able to just sort of hover and sleep right in the main current! I thought for sure they'd be swept away...it's their home though, so they're used to it.
Big Vine