Found this tid bit online.
bad sides of owning an undergravel filter...
Undergravel filters are alot like sweeping dog poop under the rug. Its bad visual, but accurate to some extent. Unless you’re careful about regularly vacuuming your substrate, moving the décor about, and the occasional complete or nearly complete tear down, “gunk” (a polite term) does tend to accumulate in the gravel and particularly under the plates of UG filters.
In fairness, all types of filtration have their respective maintenance and up-keep issues… and if everyone's careful enough to not overfeed, overcrowd, ignore their regular maintenance, undergravel filters can be run safely for years and years.
2. UGF's Can't be used with certin fish.
Eartheating Juraparoids and many other Neotropical cichlids, “engineering” gobies of many sorts in marine systems, and many other animals that burrow extensively can create “channeling” problems with undergravel filters, digging out the substrate, allowing water to easily pass though their tunnels, while dropping circulation through the rest of the filter “bed” (the substrate) to dangerous anaerobic levels… with these choices in livestock, you’re well-advised to at least use other types of filtration IN ADDITION to your undergravel plates.
3. UGFs Can Produce Noxious Gases—Creating Dead Zones
Most everyone who’s been in the hobby long enough can relate an incident of “rotten egg” smell (Hydrogen Sulfide) wipe-out in an aquarium serviced with undergravel filtration. These instances are almost all matters of inadequate maintenance, where the aquarist neglected regular maintenance, fed too much of inappropriate foods, had too much bio-load… reminds me of folks getting defibrillated for myocardial infarctions (heart attacks), “If you would have stuck with your 12 point maintenance program we wouldn’t have to jump start you.” Honestly, if you’re marginally diligent in gravel vacuuming/water changing, stirring your gravel… and other simple aspects of proper aquarium husbandry, stinky UGF wipe-out/dead zones are highly unlikely.
4. With UGF Use Fishes Can Get Trapped Under The Plates
“Where’d my Clown, Kuhli Loaches, Gobies, Blennies…. go?” “Let’s see, there not carpet jerky… I bet it’s that darned cat!” There are a host of fish species (and some invertebrates) that delight in hiding out under UG filter plates… the good news is that most all of them are just as facile at coming back out… If you’re missing some livestock and suspect that it’s ensconced under your UGF don’t panic, don’t tear the tank apart… very likely your aquatic charges will re-emerge on their own… when they’re hungry.
At least with undergravel use you have less chance of your livestock “jumping out” through extra and larger openings made to fit hoses and attachments, necessary with other types of filter use.
5.Undergravel Filters May Present A Problem With Plants
Many rooted plants (as opposed to floating or surface types) have difficulties with too much water circulation as produced with undergravel filter use… growing slowly or not at all due to the aerobic changes that such gear induces. Is this a big problem? Not at all! Swordplants, Crypts, Vallisnerias, Sagittarias et al. can be easily “blind potted” in trays, clay pots and such or an area left open (sans an undergravel plate) for their planting… or a section/plate of impervious (likely plastic) sheet inserted over the undergravel plate where you want to put them. So there!