There is a slight difference. Both can get clogged with algea and minerals and stuff like that, but the foam bubble walls can be reopened with a pin. So they can always be cleaned and you never have to worry about replacing them. Once hte stone ones become clogged, thats it, time to replace them, but if you get them in packs of 4+ it really wont matter that much in the end.
I have both, I use the foam for an entire wall and I use the stones for little jets and and more intricate stuff.