The original question is about the relationship between tank size and filter spec. The consensus is that you cannot filter out what isn't there but "over-filtering" is actually less of a concern in itself than controlling the current that is produced. Good filters come with flow regulators, moving the water more slowly through the filter, ie increasing the contact time between pollutant and media, must be a good thing.
Purple - your additional issue is whether the filter's internal design and media can handle the maximum flow generated by its pump. Tank size is immaterial to this. I've also read that carbon will adsorb and adsorb like a sponge until saturated then dump out. I've no idea about the science behind this but I recall thinking it was credible so go along with it anyway.
Wayne's excellent point, and Purple concurs, is that "over-filtering" should not lull the fishkeeper into thinking he can overstock. Some stock calculators work on the basis of water surface area, ie the capacity for a given tank size to perform gas exchange, CO2 out oxygen in. As an example, a tank of 48Lx18Wx15H is able to handle more stock than a 48x15x18 even though the water tank capacity is identical.